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Reproducible data access

Versioned datasets, structure resources and APIs with source identifiers, provenance and release information. Counts are the actual number of records in this release.

Current release

BactoInteractDB v2.0

Release date: 2026-09-26 · Schema: v1.1 · Provenance retained · manifest + checksums

Bulk datasets

Interactions, proteins, virulence factors, pathways and evidence.

CSV / TSV / JSON

Structure resources

Experimental structure metadata and interface annotations.

PDB / CIF / JSON

REST API

Programmatic queries for identifiers, evidence and network edges.

REST / JSON

Release contents

Dataset	Format	Version	Provenance
bacterial_proteins	TSV · CSV · JSON	4,172	UniProt accession + organism + source version
host_proteins	TSV · CSV · JSON	2,109	UniProt accession + source version
interactions	TSV · CSV · JSON	3,975	IntAct record id + participants
interaction_evidence	TSV · CSV · JSON	4,056	Detection method + source record + PMID
virulence_factors	TSV · CSV · JSON	2,980	UniProt KW-0843 (Virulence) + accession
pathways	TSV · CSV · JSON	1,018	Reactome stable identifiers
diseases	TSV · CSV · JSON	1,021
structures	TSV · CSV · JSON	1,881	RCSB PDB identifier + method + resolution
publications	TSV · CSV · JSON	32	PMID / DOI + journal metadata

Third-party data are redistributed only where source licences permit. Where redistribution is restricted, releases provide identifiers, source links, mapping tables and retrieval instructions.