Documentation
Documentation, provenance and evidence ontology
The documentation makes every record reproducible: what was integrated, how it was curated, how evidence is classified and how the resource can be cited.
Data sources
BactoInteractDB integrates authoritative biological resources while preserving source identifiers, versions, publication links and evidence provenance.
| IntAct | Experimentally-curated molecular interactions | PSICQUIC current · 4,056 records · 2026-09-26 |
| IntAct | Experimentally-curated molecular interactions | PSICQUIC current · 4,056 records · 2026-09-26 |
| PHI-base | Pathogen–host phenotypes (not ingested) | not ingested pilot scope |
| PubMed | Literature metadata (PMID, DOI, journal) | E-utilities · 32 records · 2026-09-26 |
| RCSB PDB | Experimental 3D structures & complexes | Data API · 1,881 records · 2026-09-26 |
| RCSB PDB | Experimental 3D structures & complexes | Data API · 1,881 records · 2026-09-26 |
| Reactome | Host pathway associations | Content Service · 1,018 records · 2026-09-26 |
| Reactome | Host pathway associations | Content Service · 1,018 records · 2026-09-26 |
| UniProt Diseases | cc_disease · 1,021 records · 2026-09-26 | |
| UniProtKB | Protein identity, sequence, function, virulence keyword & disease involvement | 2026_03 · 6,281 records · 2026-09-26 |
| VFDB | Virulence factors (not ingested — access-restricted) | not ingested access restricted |
Evidence ontology
EXPDirect experimental molecular interaction
CURCurated pathogenicity / phenotype evidence
INFInferred association (orthology / network)
PREDComputational prediction, shown separately from experimental evidence
Evidence principle
Experimental, curated, inferred and predicted relationships remain explicitly distinguishable throughout the interface and in all downloadable data.